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Query Term(s)
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LD TAG SNP Selection (TagSNP)
Query by :
Gene Name
Gene ID
SNP rsID
Chromosome Position
Gene name:
5` Flanking (bp):
3` Flanking (bp):
Gene ID:
5` Flanking (bp):
3` Flanking (bp):
Paste a list of SNP rsid
Chromosome:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
X
Y
MT
Start position(bp):
End position(bp):
Genotype Data:
HapMap
dbSNP
Population:
ASW
CEU
CHB
CHD
GIH
JPT
LWK
MEX
MKK
TSI
YRI
Sub-Saharan African
Asian
European
African American
Hispanic
Force in SNPs
Force out SNPs
SNP design score
SNP design score cutoff
r
2
CLD
LD method
Minimum # of valid genotype pairs required to calculate LD
LD threshold
Maximum distance (bp) between SNPs for calculation of LD
Minor allele frequency range
Minimum number of SNPs tagged by each tag SNP
Figure:
LD figure
Genotype figure
Sort by:
LD similarity
Genotype similarity
Chromosome position
Show LD bins
Show minor allele frequency track
Show chromosome position track
Flag nsSNPs
Color SNPs with genomic context
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